Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs138568838 chr3:153681624 T/C 0 506 22.47 22.73 0.23 KM Plot
LGG rs138655186 chr7:20718257 AAAAAC/A 3.36E-5 498 24.62 20.98 14.37 KM Plot
LGG rs138864104 chr7:20719245 AAAAATGAG/A 3.48E-5 499 24.73 21.13 14.37 KM Plot
LGG rs138916171 chr5:168965709 CA/C 1.46E-8 509 22.37 23.63 6.83 KM Plot
LGG rs139049537 chr9:37952753 GAACC/G 7.86E-7 505 22.73 20.55 5.03 KM Plot
LGG rs139069106 chr16:8709452 A/AAAAC 4.11E-5 499 9.93 17.73 24.18 KM Plot
LGG rs139104732 chr5:169012261 GTC/G 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs139816430 chr5:169051589 T/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs139983293 chr14:24414686 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs140006078 chr5:168992619 TAA/T 1.52E-8 508 22.37 23.85 6.83 KM Plot
LGG rs140018600 chr3:153677673 C/CA 0 505 22.1 22.78 0.23 KM Plot
LGG rs140083289 chr5:169041212 G/GA 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs140868651 chr19:19432290 AG/A 1.78E-5 504 21.7 27.97 15.05 KM Plot
LGG rs140921430 chr14:24417221 C/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs141009696 chr5:169015998 TC/T 1.65E-8 506 21.87 23.85 6.83 KM Plot